Welcome to HippMapp3r’s documentation!

HippMapp3r (pronounced hippmapper) is a CNN-based segmentation technique of the whole hippocampus using MRI images from BrainLab. It can deal with brains with extensive atrophy and segments the hippocampi in seconds. It uses a T1-weighted image as the only input and segments skull-stripped images. Note: skull-stripping is a required preprocessing step if the skull is present.